Vine maturity was significantly correlated (P-value < 0
Towards the chromosome cuatro, the about three QTLs was in fact in the 66
Field plots of land demonstrating the results of your marker genotypic groups (AAAA, AAAB, AABB, ABBB, BBBB) off cuatro applicant SNPs with the tuber sugar concentration (GLU); bud-end fry color (FBE); stem-tuber fry colour (FSE); ID, Idaho
The new co-localization out of several QTLs at the readiness locus region within study was consistent with the seen patterns away from phenotypic correlations. 01) with quite a few faculties overlapping an identical hereditary standing (Fig. 1). For example, EBID11 and you may VWID11 results one another presented a powerful negative relationship that have MAT95ID and you may MAT120ID. Which pattern could possibly get give an explanation for biggest feeling QTL having later on readiness closely for the put-off onset of VW and EB, or simply, early readiness leading to early start of VW and you can EB. A relatively large correlation was also noticed anywhere between vine readiness and you can development habit, that have early readiness with the even more distributed gains behavior. On the other hand, a decreased correlation (r ? 0.2) ranging from vine readiness and you will one another tuber glucose amount and you may bud-avoid fry color try in line with different types towards QTL outcomes.
Tuber sugar, bud-end and you may stem-stop fry colour
Including chromosome 5, high QTLs to have glucose, bud-end and stem-end fry color was basically sensed in the overlapping aspects of chromosomes 4, six, 10, and you can 11. 0 cM on the LOD results ranging from 4.five to six.0 (Dining table 3, Fig. 4). These types of QTLs explained between 7.dos and 11.3% of your own attribute difference. Studies of various simple patterns shown one best-suitable model for everyone about three attributes, having a double-simplex allele (AAAB ? AAAB) with the homologous chromosomes H2 and you will H5 out-of RGR and Public relations, correspondingly (Table step three, A lot more document 8: Contour S4). To own glucose, the B allele try in the high sugar amount, if you’re for bud-stop and you will stalk-stop fry colour, the clear presence of the B allele expressed lower reflectance thinking (Fig. 3b).
LOD get distribution away from QTLs for three faculties along side several potato chromosomes (Chr). Abbreviations try such as Fig. 1
A candidate SNP for a double-simplex configuration on H2 and H5 is solcap_c2_12976 at position 67.4 cM. On the reference PGSC v4.03 Pseudomolecules, this SNP maps to the long arm of chromosome 4 at position 69.1 Mb on the F-box and WD40 domain protein gene (PGSC0003DMG400003339), which is close (< 2 Mb) to several genes associated with starch/sugar inter-conversion as annotated in the potato reference genome, and/or associated with tuber quality traits . They include alpha amylase (AMY-4/1 PGSC0003DMG400007974, AMY-4/2 PGSC0003DMG400009891), hexose transporter (HT-4/3, PGSC0003DMG400009994), invertase (NV-4, PGSC0003DMG400009936), and starch branching enzyme I (SBE I, PGSC0003DMG400009981).
On chromosome 6, significant QTLs mapped at 53 cM for glucose and at 43 cM for FBE and SBE, respectively. The LOD profiles ranged from datingranking.net/escort-directory/mesa/ 5.4 to 7.6 and explained between 10.8 and 16.1% of the trait variance, respectively (Table 3, Additional file 9: Figure S5). The best model for all three traits was a double-simplex configuration with allele effects on H2 and H5. As in chromosome 4, the presence of the B alleles was associated with an increase in glucose concentration and a decrease in reflectance readings (Fig. 3c). There are four candidate SNPs with a double simplex configuration nearby (solcap_snp_c2_33777, solcap_snp_c1_10130, solcap_snp_c2_5769, solcap_snp_c2_56145, c1_3003). All were significantly (P-value < 0.0001) associated with the mean trait values, however, solcap_snp_c2_56145 had on average the highest percent of variance explained (9% to 16%). The SNP solcap_snp_c2_56145 maps at position 51.4 Mb of the potato reference genome on the ATP binding protein gene PGSC0003DMG400033089. This SNP is located in a region (
seven Mb) which includes several genes associated with the starch/glucose inter-conversion along with hexokinase (HXK-6, PGSC0003DMG400016521), fructokinase (FRK-6/step 1, PGSC0003DMG400027017, FRK-6/2, PGSC0003DMG400026916), and you can invertase (INV-na-6/1, PGSC0003DMG400026107, INV-6/2, PGSC0003DMG400033142) genetics.
Vine maturity was significantly correlated (P-value Towards the chromosome cuatro, the about three QTLs was in fact in the 66 Field plots of land demonstrating the results of your marker genotypic groups (AAAA, AAAB, AABB, ABBB, BBBB) off cuatro applicant SNPs with the tuber sugar concentration (GLU); bud-end fry color (FBE); stem-tuber fry colour (FSE); ID, Idaho The new co-localization out of several QTLs at the readiness locus region within study was consistent with the seen patterns away from phenotypic correlations. 01) with quite a few faculties overlapping an identical hereditary standing (Fig. 1). For example, EBID11 and you may VWID11 results one another presented a powerful negative relationship that have MAT95ID and you may MAT120ID. Which pattern could possibly get give an explanation for biggest feeling QTL having later on readiness closely for the put-off onset of VW and EB, or simply, early readiness leading to early start of VW and you can EB. A relatively large correlation was also noticed anywhere between vine readiness and you can development habit, that have early readiness with the even more distributed gains behavior. On the other hand, a decreased correlation (r ? 0.2) ranging from vine readiness and you will one another tuber glucose amount and you may bud-avoid fry color try in line with different types towards QTL outcomes. Tuber sugar, bud-end and you may stem-stop fry colour Including chromosome 5, high QTLs to have glucose, bud-end and stem-end fry color was basically sensed in the overlapping aspects of chromosomes 4, six, 10, and you can 11. 0 cM on the LOD results ranging from 4.five to six.0 (Dining table 3, Fig. 4). These types of QTLs explained between 7.dos and 11.3% of your own attribute difference. Studies of various simple patterns shown one best-suitable model for everyone about three attributes, having a double-simplex allele (AAAB ? AAAB) with the homologous chromosomes H2 and you will H5 out-of RGR and Public relations, correspondingly (Table step three, A lot more document 8: Contour S4). To own glucose, the B allele try in the high sugar amount, if you’re for bud-stop and you will stalk-stop fry colour, the clear presence of the B allele expressed lower reflectance thinking (Fig. 3b). LOD get distribution away from QTLs for three faculties along side several potato chromosomes (Chr). Abbreviations try such as Fig. 1 A candidate SNP for a double-simplex configuration on H2 and H5 is solcap_c2_12976 at position 67.4 cM. On the reference PGSC v4.03 Pseudomolecules, this SNP maps to the long arm of chromosome 4 at position 69.1 Mb on the F-box and WD40 domain protein gene (PGSC0003DMG400003339), which is close ( On chromosome 6, significant QTLs mapped at 53 cM for glucose and at 43 cM for FBE and SBE, respectively. The LOD profiles ranged from 5.4 to 7.6 and explained between 10.8 and 16.1% of the trait variance, respectively (Table 3, Additional file 9: Figure S5). The best model for all three traits was a double-simplex configuration with allele effects on H2 and H5. As in chromosome 4, the presence of the B alleles was associated with an increase in glucose concentration and a decrease in reflectance readings (Fig. 3c). There are four candidate SNPs with a double simplex configuration nearby (solcap_snp_c2_33777, solcap_snp_c1_10130, solcap_snp_c2_5769, solcap_snp_c2_56145, c1_3003). All were significantly (P-value seven Mb) which includes several genes associated with the starch/glucose inter-conversion along with hexokinase (HXK-6, PGSC0003DMG400016521), fructokinase (FRK-6/step 1, PGSC0003DMG400027017, FRK-6/2, PGSC0003DMG400026916), and you can invertase (INV-na-6/1, PGSC0003DMG400026107, INV-6/2, PGSC0003DMG400033142) genetics.
August 21, 2022
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Towards the chromosome cuatro, the about three QTLs was in fact in the 66
Field plots of land demonstrating the results of your marker genotypic groups (AAAA, AAAB, AABB, ABBB, BBBB) off cuatro applicant SNPs with the tuber sugar concentration (GLU); bud-end fry color (FBE); stem-tuber fry colour (FSE); ID, Idaho
The new co-localization out of several QTLs at the readiness locus region within study was consistent with the seen patterns away from phenotypic correlations. 01) with quite a few faculties overlapping an identical hereditary standing (Fig. 1). For example, EBID11 and you may VWID11 results one another presented a powerful negative relationship that have MAT95ID and you may MAT120ID. Which pattern could possibly get give an explanation for biggest feeling QTL having later on readiness closely for the put-off onset of VW and EB, or simply, early readiness leading to early start of VW and you can EB. A relatively large correlation was also noticed anywhere between vine readiness and you can development habit, that have early readiness with the even more distributed gains behavior. On the other hand, a decreased correlation (r ? 0.2) ranging from vine readiness and you will one another tuber glucose amount and you may bud-avoid fry color try in line with different types towards QTL outcomes.
Tuber sugar, bud-end and you may stem-stop fry colour
Including chromosome 5, high QTLs to have glucose, bud-end and stem-end fry color was basically sensed in the overlapping aspects of chromosomes 4, six, 10, and you can 11. 0 cM on the LOD results ranging from 4.five to six.0 (Dining table 3, Fig. 4). These types of QTLs explained between 7.dos and 11.3% of your own attribute difference. Studies of various simple patterns shown one best-suitable model for everyone about three attributes, having a double-simplex allele (AAAB ? AAAB) with the homologous chromosomes H2 and you will H5 out-of RGR and Public relations, correspondingly (Table step three, A lot more document 8: Contour S4). To own glucose, the B allele try in the high sugar amount, if you’re for bud-stop and you will stalk-stop fry colour, the clear presence of the B allele expressed lower reflectance thinking (Fig. 3b).
LOD get distribution away from QTLs for three faculties along side several potato chromosomes (Chr). Abbreviations try such as Fig. 1
A candidate SNP for a double-simplex configuration on H2 and H5 is solcap_c2_12976 at position 67.4 cM. On the reference PGSC v4.03 Pseudomolecules, this SNP maps to the long arm of chromosome 4 at position 69.1 Mb on the F-box and WD40 domain protein gene (PGSC0003DMG400003339), which is close (< 2 Mb) to several genes associated with starch/sugar inter-conversion as annotated in the potato reference genome, and/or associated with tuber quality traits . They include alpha amylase (AMY-4/1 PGSC0003DMG400007974, AMY-4/2 PGSC0003DMG400009891), hexose transporter (HT-4/3, PGSC0003DMG400009994), invertase (NV-4, PGSC0003DMG400009936), and starch branching enzyme I (SBE I, PGSC0003DMG400009981).
On chromosome 6, significant QTLs mapped at 53 cM for glucose and at 43 cM for FBE and SBE, respectively. The LOD profiles ranged from datingranking.net/escort-directory/mesa/ 5.4 to 7.6 and explained between 10.8 and 16.1% of the trait variance, respectively (Table 3, Additional file 9: Figure S5). The best model for all three traits was a double-simplex configuration with allele effects on H2 and H5. As in chromosome 4, the presence of the B alleles was associated with an increase in glucose concentration and a decrease in reflectance readings (Fig. 3c). There are four candidate SNPs with a double simplex configuration nearby (solcap_snp_c2_33777, solcap_snp_c1_10130, solcap_snp_c2_5769, solcap_snp_c2_56145, c1_3003). All were significantly (P-value < 0.0001) associated with the mean trait values, however, solcap_snp_c2_56145 had on average the highest percent of variance explained (9% to 16%). The SNP solcap_snp_c2_56145 maps at position 51.4 Mb of the potato reference genome on the ATP binding protein gene PGSC0003DMG400033089. This SNP is located in a region (
seven Mb) which includes several genes associated with the starch/glucose inter-conversion along with hexokinase (HXK-6, PGSC0003DMG400016521), fructokinase (FRK-6/step 1, PGSC0003DMG400027017, FRK-6/2, PGSC0003DMG400026916), and you can invertase (INV-na-6/1, PGSC0003DMG400026107, INV-6/2, PGSC0003DMG400033142) genetics.